Apolipoprotein E and Alzheimer disease: risk, mechanisms, and therapy

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Orangeblossom
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Apolipoprotein E and Alzheimer disease: risk, mechanisms, and therapy

Post by Orangeblossom »

Apolipoprotein E and Alzheimer disease: risk, mechanisms, and therapy

https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3726719/

Looks detailed and informative but I didn't realise the risks were as high as that. I thought it was more like 20% .. :(

"APOE ε4 as a strong risk factor for AD

Genome-wide association studies have confirmed that the ε4 allele of APOE is the strongest genetic risk factor for AD.16, 17 The presence of this allele is associated with increased risk for both early-onset AD and LOAD.18, 19 A meta-analysis of clinical and autopsy-based studies demonstrated that, compared with individuals with an ε3/ε3 genotype, risk of AD was increased in individuals with one copy of the ε4 allele (ε2/ε4, OR 2.6; ε3/ε4, OR 3.2) or two copies (ε4/ε4, OR 14.9) among Caucasian subjects.10 The ε2 allele of APOE has protective effects against AD: the risk of AD in individuals carrying APOE ε2/ε2 (OR 0.6) or ε2/ε3 (OR 0.6) are lower than those of ε3/ε3.10 In population-based studies, the APOE4–AD association was weaker among African Americans (ε4/ε4, OR 5.7) and Hispanics (ε4/ε4, OR 2.2) and was stronger in Japanese people (ε4/ε4, OR 33.1) compared with Caucasian cases (ε4/ε4, OR 12.5).10 APOE ε4 is associated with increased prevalence of AD and lower age of onset.7, 10, 20 The frequency of AD and mean age at clinical onset are 91% and 68 years of age in ε4 homozygotes, 47% and 76 years of age in ε4 heterozygotes, and 20% and 84 years in ε4 noncarriers,7, 20 indicating that APOE ε4 confers dramatically increased risk of development of AD with an earlier age of onset in a gene dose-dependent manner (Figure 1b)."
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Re: Apolipoprotein E and Alzheimer disease: risk, mechanisms, and therapy

Post by Orangeblossom »

Whereas this is from the UK Alzheimer's UK Website:

Risk genes for Alzheimer's disease

The vast majority of people with Alzheimer's disease do not inherit it from a parent as a single-gene mutation with a simple inheritance pattern. Instead, the inheritance follows a more complex pattern. The disease might skip a generation, affect people on both sides of the family, appear seemingly from nowhere or not be passed on at all.

More than 20 gene variants (or regions within the DNA) have now been identified which affect - to different degrees - the chances of a person developing Alzheimer's disease. The effects of these genes are subtle. Different variants act to slightly increase or decrease the risk of a person developing Alzheimer's disease, but do not directly cause it. These 'risk genes' interact with each other and with other factors, such as age and lifestyle, to influence someone's overall risk of getting the disease.

Unlike familial Alzheimer's disease, this multi-gene form generally affects older people, with symptoms starting after the age of 65. The gene with the greatest known effect on the risk of developing late-onset Alzheimer's disease is called apolipoprotein E (APOE). This gene is found on chromosome 19 and the APOE protein plays a role in handling fats in the body, including cholesterol. The APOE gene comes in three variants, which are named with the Greek letter epsilon (e): APOE e2, APOE e3 and APOE e4.

We each have two copies of the APOE gene, and these may be the same as each other or different. Therefore everyone is born with one of the six possible combinations: e2/e2, e2/e3, e3/e3, e2/e4, e3/e4 or e4/e4. The combination we have affects our risk of Alzheimer's disease, as follows:

APOE e4 is associated with a higher risk of Alzheimer's disease. About 25 per cent of the general population inherits one copy of APOE e4. This increases their lifetime risk of developing Alzheimer's disease by a little more than two times, on average. People with APOE e4 also tend to develop Alzheimer's at a younger age.
About 2 per cent of the population gets a 'double dose' of the APOE e4 gene - one from each parent. This increases their risk of developing Alzheimer's disease by about three to five times, on average. However, they are still not certain to develop Alzheimer's disease.
About 60 per cent of the population has a 'double dose' of the APOE e3 gene and is at average risk. Up to a quarter of this group develops Alzheimer's disease by their late 80s.
The APOE e2 variant of the gene is associated with a lower risk of Alzheimer's - people with it are slightly less likely to develop the disease. In the general population, 11 per cent have one copy of APOE e2 and one copy of APOE e3, while 0.5 per cent (1 in 200) have two copies of APOE e2.
For a long time, APOE was the only gene to be consistently linked to the risk of late-onset Alzheimer's disease. However, recent scientific advances have allowed researchers to test many more genes to see whether there are other gene variants linked to Alzheimer's disease.

This has revealed several other genes that have variants linked to increased or decreased risk of Alzheimer's. These include genes known as CLU, CR1, PICALM, BIN1, ABCA7, MS4A, CD33, EPHA1 and CD2AP. These are thought to have roles in inflammation and immunity, fat metabolism or transport within cells. The variants of these genes affect a person's risk of developing Alzheimer's disease much less than APOE. Researchers suspect that there are many more risk genes that have not yet been discovered.

If a birth relative has been diagnosed with Alzheimer's disease, it is natural for you to wonder whether you are at increased risk. If you have a close relative (parent or sibling) who has been diagnosed with late-onset Alzheimer's disease, your chances of developing the disease rise slightly compared to someone with no family history of the disease. However, it does not mean that dementia is inevitable for you. Everyone can reduce their overall risk by adopting a healthy lifestyle.
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Re: Apolipoprotein E and Alzheimer disease: risk, mechanisms, and therapy

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Orangeblossom wrote:Apolipoprotein E and Alzheimer disease: risk, mechanisms, and therapy

https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3726719/

Looks detailed and informative but I didn't realise the risks were as high as that. I thought it was more like 20% .. :(

"APOE ε4 as a strong risk factor for AD

Genome-wide association studies have confirmed that the ε4 allele of APOE is the strongest genetic risk factor for AD.16, 17 The presence of this allele is associated with increased risk for both early-onset AD and LOAD.18, 19 A meta-analysis of clinical and autopsy-based studies demonstrated that, compared with individuals with an ε3/ε3 genotype, risk of AD was increased in individuals with one copy of the ε4 allele (ε2/ε4, OR 2.6; ε3/ε4, OR 3.2) or two copies (ε4/ε4, OR 14.9) among Caucasian subjects.10 The ε2 allele of APOE has protective effects against AD: the risk of AD in individuals carrying APOE ε2/ε2 (OR 0.6) or ε2/ε3 (OR 0.6) are lower than those of ε3/ε3.10 In population-based studies, the APOE4–AD association was weaker among African Americans (ε4/ε4, OR 5.7) and Hispanics (ε4/ε4, OR 2.2) and was stronger in Japanese people (ε4/ε4, OR 33.1) compared with Caucasian cases (ε4/ε4, OR 12.5).10 APOE ε4 is associated with increased prevalence of AD and lower age of onset.7, 10, 20 The frequency of AD and mean age at clinical onset are 91% and 68 years of age in ε4 homozygotes, 47% and 76 years of age in ε4 heterozygotes, and 20% and 84 years in ε4 noncarriers,7, 20 indicating that APOE ε4 confers dramatically increased risk of development of AD with an earlier age of onset in a gene dose-dependent manner (Figure 1b)."

Hi Orange Blossom,

The rates of AD in ApoE4/E4 that are cited in the article are old estimates based on statistical modeling, and have been debunked. The best data available are actually DATA, not modeling. They were published earlier this year in PLOS Medicine by a group from 13 academic centers, including Banner. They find that lifetime incidence of dementia to age 80-85 was in the ranges of 30-40%, depending on the age of the subject. (Full citation: Qian J et al., PLoS Med 14:e1002254). Still high, but much better than those that you found. And, as you are learning from this site, there are steps that we can take to improve the odds further. Good luck!


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Re: Apolipoprotein E and Alzheimer disease: risk, mechanisms, and therapy

Post by Orangeblossom »

Thank you, I hope I have not worried others with sharing this. I didn't realise. It sounds in the article as if these are facts based on data. NOT modelling, they should have been clearer. :?

Is that lifetime incidence for E4s or everyone? I know one E4 means 2/3 times average risk and two E4s more?
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Re: RE: Re: Apolipoprotein E and Alzheimer disease: risk, mechanisms, and therapy

Post by Stavia »

DesertRaven wrote:
Orangeblossom wrote:Apolipoprotein E and Alzheimer disease: risk, mechanisms, and therapy

https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3726719/

Looks detailed and informative but I didn't realise the risks were as high as that. I thought it was more like 20% .. :(

"APOE ε4 as a strong risk factor for AD

Genome-wide association studies have confirmed that the ε4 allele of APOE is the strongest genetic risk factor for AD.16, 17 The presence of this allele is associated with increased risk for both early-onset AD and LOAD.18, 19 A meta-analysis of clinical and autopsy-based studies demonstrated that, compared with individuals with an ε3/ε3 genotype, risk of AD was increased in individuals with one copy of the ε4 allele (ε2/ε4, OR 2.6; ε3/ε4, OR 3.2) or two copies (ε4/ε4, OR 14.9) among Caucasian subjects.10 The ε2 allele of APOE has protective effects against AD: the risk of AD in individuals carrying APOE ε2/ε2 (OR 0.6) or ε2/ε3 (OR 0.6) are lower than those of ε3/ε3.10 In population-based studies, the APOE4–AD association was weaker among African Americans (ε4/ε4, OR 5.7) and Hispanics (ε4/ε4, OR 2.2) and was stronger in Japanese people (ε4/ε4, OR 33.1) compared with Caucasian cases (ε4/ε4, OR 12.5).10 APOE ε4 is associated with increased prevalence of AD and lower age of onset.7, 10, 20 The frequency of AD and mean age at clinical onset are 91% and 68 years of age in ε4 homozygotes, 47% and 76 years of age in ε4 heterozygotes, and 20% and 84 years in ε4 noncarriers,7, 20 indicating that APOE ε4 confers dramatically increased risk of development of AD with an earlier age of onset in a gene dose-dependent manner (Figure 1b)."

Hi Orange Blossom,

The rates of AD in ApoE4/E4 that are cited in the article are old estimates based on statistical modeling, and have been debunked. The best data available are actually DATA, not modeling. They were published earlier this year in PLOS Medicine by a group from 13 academic centers, including Banner. They find that lifetime incidence of dementia to age 80-85 was in the ranges of 30-40%, depending on the age of the subject. (Full citation: Qian J et al., PLoS Med 14:e1002254). Still high, but much better than those that you found. And, as you are learning from this site, there are steps that we can take to improve the odds further. Good luck!


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Desert Raven, can you please confirm the risk for a 4/4 and a 3/4 from this data?

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Re: Apolipoprotein E and Alzheimer disease: risk, mechanisms, and therapy

Post by DesertRaven »

Sure. Out for the evening now will provide the detailed numbers tomorrow. The medical study is free access, published in february, for those who can’t wait!
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Re: Apolipoprotein E and Alzheimer disease: risk, mechanisms, and therapy

Post by KatieS »

I think this is DesertRaven's reference.
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Re: Apolipoprotein E and Alzheimer disease: risk, mechanisms, and therapy

Post by Julie G »

It's worth noting that that paper DesertRaven cites was written by the Generation Study folks, who might had had the goal of alleviating concerns about carriage of E4 as they hope to recruit a huge cohort of 4/4s :idea: Who would agree to be tested if the news were dire? I hate to be cynical, but we all know that statistics can be manipulated to make a point. That said, epigenetics rule and E4 is not deterministic, even for 4/4s!
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Re: Apolipoprotein E and Alzheimer disease: risk, mechanisms, and therapy

Post by Stavia »

thanks guy. It's certainly more encouraging than other estimates I've seen.
The wide variation is interesting. Apoe4 is certainly not deterministic according to this data.

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Re: Apolipoprotein E and Alzheimer disease: risk, mechanisms, and therapy

Post by NF52 »

Stavia,
Here's the relevant quote from the PLOS study: (embedded in the longer quote at the end of this post.
The Generation Study elected to disclose the following “lifetime” risks of MCI or dementia to its potential participants: 30%–55% for individuals with APOE-e4/e4; 20%–25% for individuals with APOE-e3/e4 and -e2/e4 (with a note that risk might be lower for those with APOE-e2/e4); and 10%–15% for individuals with APOE-e3/e3, -e3/e2, and -e2/e2 (with a note that risk might be lower for those with APOE-e2/e3 and -e2/e2).
I've referenced this PLOS article often, because I think it does a terrific job of explaining in fairly understandable terms the difference between a model of Alzheimer's and the prospective studies of actual groups. The authors go into fascinating descriptions of the similarities as well as limitations of the 4 studies they used for meta-analysis, which included the Framingham Study and Rotterdam study. They are open about the goal of the Generations Study as well as the need for ALL prevention studies to have cohort groups which are statistically and clinically justifiable: the need to determine what is the necessary length of time for a longitudinal study of a currently "healthy" cohort in order to determine risk of progression to either MCI or AD.

More importantly, the authors spend a significant section of the "Discussion" on the need to provide potential study participants with accurate data and an understanding of the variability in "relative risk" of groups and "absolute risk" of any one individual. They note on multiple occasions that the ability to provide personalized risk analysis, gender-based risk analysis etc. is not where individuals or researchers would like it to be.

As an example of how data can be confounding, they note that early sign-ups for Gene Match were overwhelmingly white (about 90%) female (about 80%) and had a first degree relative with AD or dementia (about 70%) and that therefore recruitment efforts should try to reach populations not well-represented. They noted than on one earlier study (not theirs), men showed a higher rate of progression to AD and MCI--an entirely unexpected result given incidence rates for AD in women versus men. Rather than assume this means the study proved that ApoE 4 men do have the same risk as women based on this one sample, these authors speculate that men who volunteered for the study self-selected on the basis of subjective memory complaints. That would be consistent with many studies showing that subjective memory complaints and lower cognitive scores at baseline are associated with progression to MCI.
So the Generations Study added questions about subjective memory complaints at screening and at every Generations visit, to be able to do that level of analysis in the future. I appreciate that, especially since every week the media trumpets another "discovery" from one mouse study or another.

I think it's absolutely necessary to be able to offer people reassurance that the best estimates are that 1) there's wide variation among people with ApoE 4/4, so no one can say what any one's individual risk of AD is for the next 5 years or over the lifetime and 2) it appears that unlike OLD studies saying diagnosis is likely to be at age 68, the 5-year risk at ages 65-69 is highly variable, but still relatively small, and that the lifetime risk to 85 (current life expectancy) is somewhere between 40-60% but probably not over 60%.

As for recruiting people to the Generations Study, as a participant I can safely say that I know of two people who elected NOT to participate when they were reassured about their risk (both men!) Given the requirements for screening over a period of up to 90 days, no one goes into this study because it's easy and reassuring. We do it so the questions around prevention of MCI and AD using amyloid immunotherapy and/or BACE-1 inhibition of amyloid precursor protein can be answered once and for all

APOE-related risk of mild cognitive impairment and dementia for prevention trials: An analysis of four cohorts
In the genetic counseling setting, any risk information would need to give a broad range of estimates to reflect uncertainty within cohorts and variation across cohorts. Because risk for disease is ongoing, and the lifetime risks were more stable than the 5-y risks in our analyses, we thought the lifetime risks were more informative for genetic disclosure. However, such risks may be less salient to some of those considering enrollment in trials at younger ages. The Generation Study elected to disclose the following “lifetime” risks of MCI or dementia to its potential participants: 30%–55% for individuals with APOE-e4/e4; 20%–25% for individuals with APOE-e3/e4 and -e2/e4 (with a note that risk might be lower for those with APOE-e2/e4); and 10%–15% for individuals with APOE-e3/e3, -e3/e2, and -e2/e2 (with a note that risk might be lower for those with APOE-e2/e3 and -e2/e2). These values are consistent with our findings, but use round numbers for intelligibility, and broader ranges to reflect statistical and other sources of uncertainty. The regression models are insufficiently precise for “personalized medicine” incidence estimates based on sex, education, or other factors, but they do allow for qualitative adjustments to overall stratified risk estimates. Relative risks by APOE genotype or APOE-e4 dose have limited relevance in the setting of the prevention trial, but may provide context. If these are provided, risk should be compared to the general population (based on a weighted average across the three possible APOE-e4 doses rather than the typical “no APOE-e4” base category used in regression models), which would more fairly allow a participant to put his or her own risk in the context of friends and acquaintances of unknown genotype. On the basis of our regression findings (S1 Appendix Table E), for APOE-e4/e4 homozygotes, the adjusted relative risk for MCI/dementia is 2.7 for NACC, 3.4 for the Framingham Heart Study, and 2.4 for the Rotterdam Study, so disclosing a relative risk of about 3-fold compared to the general population would make sense
4/4 and still an optimist!
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