The antimicrobial protection hypothesis of Alzheimer's disease

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BrianR
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The antimicrobial protection hypothesis of Alzheimer's disease

Post by BrianR »

I was looking around trying to find info on the emerging research around a characteristic brain microbiome and ran across this paper. It's from the same team that recently released the herpes association with AD study.

The antimicrobial protection hypothesis of Alzheimer's disease
10.1016/j.jalz.2018.06.3040
https://www.researchgate.net/publicatio ... 's_disease

Some relevant easier to read articles are at:
  1. * Mapping The Brain's Microbiome: Can Studying Germs In The Brain Lead To A Cure For Alzheimer's?
  1. * Probe of Alzheimer’s follows paths of infection
  1. * Interview with Robert Moir: Infection in Alzheimer’s/brain microbiome
The paper was relatively readable (at least until my brain filled up). I've quoted a bunch of sections that I found interesting. (There was more, but what I've done is probably overwhelming as is.) The quote heading is my fault, not the authors'.

What Amyloid-beta (Aß)?
Aß is generated by extracellular and intramembrane endoproteolytic cleavage of APP [amyloid-ß precursor protein] ...
The Aß peptide has traditionally been characterized as a functionless byproduct of APP catabolism. This surmise has its origins in the early days of Aß research.
[ ... But research over the last twenty or so years suggests otherwise ...]
Aß has been conclusively demonstrated to be a normal constitutively generated human and animal neuropeptide. Nonetheless, the view that Aß is functionless remains widely held, despite evidence highlighting that the human Aß sequence is 100% conserved across most vertebrate species up to at least 400 million years (humans share Aß42 sequences with coelacanths, an ancient fish taxon) [9]. The absence of an identified physiological role for Aß has led to a widespread view that the peptide’s activities are unfortunate accidents of protein physiochemistry. This, in turn, has helped foster therapeutic strategies aimed at ameliorating AD by eliminating Aß. However, given the emerging findings on the role Aß plays in innate immunity [5,6], there is a clear and urgent need to more carefully assess the dominant model of AD pathogenesis emerging from errant Aß activities that has guided therapeutic strategies for over three decades.
...
Recent evidence strongly suggests that Aß plays a role as an AMP [antimicrobial peptide] in the innate immune system. Comparison of Aß and human cathelicidin antimicrobial peptide (LL-37), an archetypal human AMP, reveals extensive and striking parallels between the two peptides
...
AMPs are the primary effector proteins of the innate immune system. AMPs target bacteria, mycobacteria, enveloped viruses, fungi, protozoans, and, in some cases, transformed or cancerous host cells [22]. AMPs are also potent immunomodulators.


Some thoughts (well, questions) on how APOE4 might relate
Despite intense study, it remains unclear why expression of APOE-ε4 increases AD risk. Investigations to date have focused on models in which apoE4 is a less effective chaperone than apoE3 or apoE2, leading to reduced peptide clearance and an escalation of Aß activities held to be pathogenic.
...
ApoE is also targeted by pathogens, and apoE4 expression is associated with increased susceptibility to several microbes, including neurotrophic viruses [51]. ... possible roles for apoE4 in AD extend well beyond the poor Aß chaperone model. A fuller understanding of the role apoE plays in Aß-mediated immune pathways may well yield insights into how APOE-ε4 is an important AD risk factor.
How, specifically, might Aß work in the brain?
The leading model for how Aß may directly kill neurons involves disruption of plasma membranes through the formation of pores or carpet-like structures [63]. This widespread AMP pathway normally mediates killing of microbial cells [63]. It remains unclear why neurotoxic Aß oligomers may target neuronal membranes. AMPs discriminate prokaryotic from eukaryotic host membranes by charge and exhibit a strong specificity for anionic microbial versus zwitterionic host lipid bilayers [32,64,65]. Consistent with an AMP role, Aß normally shows a strong preference for anionic membranes, with soluble oligomers binding more avidly than monomeric peptide [66]. However, Aß is among the 12% to 15% of AMPs that are anionic rather than cationic peptides. AMP-entrapped bacteria secrete proteases that specifically target cationic peptides [67]. Thus, anionic AMPs evade microbial countermeasures aimed at freeing bacteria from AMP-mediated entrapment. However, one disadvantage is that anionic AMPs have reduced avidity for negatively charged microbial membranes. Binding and targeting of microbial membranes by anionic AMPs are typically mediated by positively charged regions that are enriched in cationic residues [67]. Anionic AMPs are also often metaloproteins that bind divalent zinc or copper ions. AMP-bound metal ions form cationic salt bridges with anionic membranes, increasing binding and specificity for microbial cells [67]. Aß is an anionic entrapment AMP and metalloprotein that simultaneously binds Zn11 and Cu11 [68]. Aß-metal binding seems likely to play a role in helping Aß oligomers to discriminate microbes from host cells. Aß oligomerization pathways generate polymorphic oligomeric species with widely differing Zn11 and Cu11 binding activities [68]. For neurotoxic oligomers, metal-mediated targeting of microbial membranes may be limited by how Zn11 and Cu11 are bound, leading to Aß species with increased propensity for binding host cells.
Neuronal membranes are also enriched in negatively charged gangliosides and phospholipid phosphatidylserine [69], which may also contribute to targeting by Aß. Further experimentation will be necessary to validate this model of metal-mediated microbial targeting and its possible involvement in Aß’s neurotoxic activities.
...
The neurotoxic activities of Aß may also include permeabilization of host mitochondrial membranes. Mitochondria are endosymbiotic and retain the anionic membranes of prokaryotes. Mitochondrial membranes are readily bound by Aß, and the peptide has been reported to cause neuronal mitochondria dysfunction [70]. AMP-induced mitophagy and mitochondrial disruption are normal immune pathways that mediate killing of infected and unhealthy host cells. However, dysregulation of these pathways can lead to degenerative pathologies, including vascular disease mediation by the killing of healthy smooth muscle by LL-37 [71]. Understanding that targeting of neuronal mitochondria by Aß may include a normal immune pathway is likely to prompt new models of mitochondrial dysfunction in neurodegeneration. This would include shifting the genesis of Aßmediated mitochondrial dysfunction from intrinsic abnormal activity to dysregulated innate immune pathway.
...
AMPs also play a role in the elaboration of ETs [extracellular traps] through ETosis, a programmed cell death pathway for neutrophils and macrophages/monocytes that occur in response to immunochallenge [75]. ETs entrap microbes in a scaffolding composed of host cellular DNA, histones, and AMPs [76]. ET-entrapped microbes are inactivated by high local AMP and ROS levels generated by the dying host cell [77]. Neutrophil-derived ETs are associated with Aß deposits in AD brain. ... In summary, targeted host cell death can be a deliberate strategy to defeat invaders. Given the wide range of protective pathways mediated by AMP host cytotoxicity, the neurotoxicity of Aß should not be assumed to be intrinsically and exclusively abnormal. Rather, Aß host cytotoxicity may mediate “beneficial suicide” pathways in normal brain. In AD, this activity may become dysregulated, leading to indiscriminate neuronal death. However, it should not be overlooked that Aß may be targeting infected or unhealthy neurons in AD brain. As we discuss later, mounting data link AD etiology with chronic neuroinfections, particularly life-long viral infections. Adaptive immune responses are largely absent from brain. If unchecked, neurons undergoing active viral replication could rapidly spread infection throughout the brain, with lethal consequences. In AD, the neurotoxic actions of Aß may be suppressing potentially serious infection, albeit at high long-term cost.
Amyloid-beta entrapment.png
Some insights from EO-FAD [early onset familial Alzheimer's disease]
Mutations in all three EO-FAD genes, PSEN1, PSEN2, and APP, accelerate Aß deposition by increasing the Aß42:Aß40 ratio, which in turn increases Aß oligomerization. Thus, in terms of the antimicrobial protection hypothesis, EO-FAD mutations can be thought of as leading to the deposition of ß-amyloid, even when not required as an antimicrobial agent.
...
In prevailing AD models, shifts in Aß isoform ratios are considered abnormal perturbations in homeostasis which lead to disease. However, among classical AMPs, shifts in isoform ratios are considered to be part of optimizing protective activities to meet emerging pathogen challenges, albeit sometimes with negative effects for host tissues. AMP isoforms have differing actions, and longer forms often have higher cytotoxicity, whereas shorter species exhibit more immunomodulatory activities [82]. Consistent with this trend, Aß42 appears to be more active than Aß40 against influenza and herpes viruses, bacteria, and C. albicans
...
Thus, shifts in Aß isoform expression may not be exclusively abnormal, and changes in APP processing in normal brain may reflect dynamic fine-tuning by the innate immune system during perceived immune challenge. Sustained shifts in Aß isoform expression, however, may result in AD pathology.
How might infection increase (or seem to increase) AD risks? Plus, singling out just one bad pathogen isn't going to cut it.
AD pathology leads to degeneration of the integrity of the blood–brain barrier and could increase susceptibility to CNS infection by blood-borne agents. Thus, the infections associated with AD may arise after the onset of the disease. Moreover, no single pathogen has been found to occur in all AD patients. The lack of association between AD and any single pathogen suggests that more than one infectious species may be able to trigger the innate immune response that can lead to Aß deposition.
...
However, given the emerging role innate immunity appears to plays in AD and links between the neuroimmune axis and neuroinflammatory disease, it may be time to give more serious consideration to possible contributions of chronic peripheral infection (potentially including enteric dysbiosis) to AD pathology.
...
It is also possible that no genuine infection is involved in AD pathology, but instead, mistaken perception of infection by the innate immune system mediates the disease.
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Kenny4/4
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Re: The antimicrobial protection hypothesis of Alzheimer's disease

Post by Kenny4/4 »

I think it's pretty clear that Amyloid is an anti-microbial.
I think it's pretty clear that some pathogens (UTI, Herpes Simplex Viruses ) exacerbate, contribute to or are a majority cause of MCI or Alzheimer's. Antedotaly my mother who now has full blown Alzheimer's had MCI that became Alzheimer's after a UTI (Urinary Tract Infection). I talked with some care givers about this and every one of them confirmed that memory, behavior and Alzheimer's symptom's are negatively affected by UTI's and most people that get a UTI do not return to previous cognitive levels.

How all this interplays and causes Alzheimer's ?-

Taupathy/inflamation as you typically don't have Amyloid exclusive plaques.

Metal binding

From above:
7]. Anionic AMPs are also often metaloproteins that bind divalent zinc or copper ions. AMP-bound metal ions form cationic salt bridges with anionic membranes, increasing binding and specificity for microbial cells [67]. Aß is an anionic entrapment AMP and metalloprotein that simultaneously binds Zn11 and Cu11 [68]. Aß-metal binding seems likely to play a role in helping Aß oligomers to discriminate microbes from host cells. Aß oligomerization pathways generate polymorphic oligomeric species with widely differing Zn11 and Cu11 binding activities [68]. For neurotoxic oligomers, metal-mediated targeting of microbial membranes may be limited by how Zn11 and Cu11 are bound, leading to Aß species with increased propensity for binding host cells.
A promising supplement for APOE4/4's Homotaurine is an anti amyloid that prevents it binding with metals. It has had Stat Sig results in APOE4/4 with MCI or Mild AD.

Brain Energy Metabolism- APOE 2 positive groups typically have a greater amount of Amyloid plaque in the brain and a higher rate of Amyloid plauqe positive indndividuals yet have lower or the same rate of Alzheimer's as APOE3's. It is believed their genetically superior glucose utilization in their brain allows them to do this. APOE4's have poor glucose utilization genetically speaking. Then there are the people who always talk about Alzheimer's being a Type 3 diabetes - losing insulin sensitivity causes a loss of function in the brain first.

On an interesting side note some parasites are quite protective to APOE 4's concerning Alzheimer's risk. Perhaps a large host of all this Amyloid clears it instead of turning into a sticky plaque ?

Maybe all of these bold points by themselves or in combinations cause Alzheimer's as Dr. Bredesen points out?
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SusanJ
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Re: The antimicrobial protection hypothesis of Alzheimer's disease

Post by SusanJ »

Sad news for those of us pulling for the non-amyloid theory researchers of the world - Robert Moir has passed away from glioblastoma.

Here's a short snippet of this STAT article that covers his work with Rudy Tanzi and others.
That dedication to scientific truth above careerism — his openness didn’t endear him to the powers that be — defined his professional life. When he died in the early hours of Friday of glioblastoma at only 58, Moir, an assistant professor of neurology at Massachusetts General Hospital and Harvard Medical School, left a legacy of brilliant science: His idea that Alzheimer’s has something to do with microbes in the brain, that amyloid plaques form in defensive response to those pathogens, and that something besides eliminating amyloid is probably our best shot at preventing or treating Alzheimer’s...

His mentor, Mass. General’s Rudolph Tanzi, called him “the most out-of-the-box thinker I’ve ever met — in any field. He doesn’t even see the box.”
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Re: The antimicrobial protection hypothesis of Alzheimer's disease

Post by Family Tree Guy »

BrianR- great thread.
I follow this topic quite closely and I am also 'rooting' for the pathogen theory of AD, because it would seem to be fixable to some degree. Very recent research out of Cortexyme (company investigating the so called gingipain hypothesis, that the bacteria P. Gingivalis causes AD) gives a coherent explanation why Apoe4 makes things worse: https://www.cortexyme.com/?p=6981) Note this is a press release describing a scientific presentation, so not as much detail as a full paper. To grossly simplify, they present the case that this type of bacteria is asacrolytic, that is it does not eat/consume carbohydrates like most bacteria, but instead proteins. the bacteria secretes a type of enzyme called gingipains, which preferentially cause havoc with the Apoe4s. ( at least in vitro).

The big picture question they attempt to answer-- if AD is caused by a pathogen, how could this be consistent with the observation that E4 carriers have higher risk? I find their explanation logical, but in science (especially in biology), logic does not always win-- we need data to see for sure.
best, FTG
NewRon
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Re: The antimicrobial protection hypothesis of Alzheimer's disease

Post by NewRon »

This may answer some of your questions, FTG:

https://www.newscientist.com/article/mg ... ntent=news
Apo E4/E4, Male, Age 60
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Re: The antimicrobial protection hypothesis of Alzheimer's disease

Post by Family Tree Guy »

NewRon wrote:This may answer some of your questions, FTG:

https://www.newscientist.com/article/mg ... ntent=news
Thanks so much for sharing this link. I had not seen that article before.
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